No problem!
So, the HDMI cable is indeed a DIY kit from ThePiHut:
https://thepihut.com/search?q=diy+hdmi&narrow_by=&sort_by=relevency&page=1
I’m using a female stand HDMI to connect to the Pi-Top Hub, and passing the ribbon cable directly under the adaptor & Hub:
The other end can be any type of HDMI they offer (not an USB - more on that in a bit); for this specific CM5 carrier board I needed a full sized HDMI but for say the WaveShare nano board I’d need a Mini HDMI which I picked up just in case (along with Micro HDMI).
I just pass the ribbon cable for the GPIO adapter under this HDMI adapter & ribbon cable:
As for the USB, it is indeed a standard USB-A Female to Male cable I had lying around; not sure where I brought it from but does fit in ok - it’s a little long so am looking at other options:

One option would be the same DIY adaptors as the HDMI as they do USB ends too, but aren’t cross compatible so HDMI > HDMI and USB > USB.
Me however just ordered an USB Adapter for a Motherboard with a right angle which should fit quite nicely (I hope!):
Shall let you know when it arrives as they do a left angle and straight version too…
Going to work on seeing about fitting the CM5 carrier board in now as that’s the main issue now for me!